Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015914869.1_cds_XP_016464814.1_57822
CDS Infomation

[gene=LOC107787720] [db_xref=GeneID:107787720] [protein=photosystem II stability/assembly factor HCF136, chloroplastic-like isoform X1] [protein_id=XP_016464814.1] [location=join(25473..25785,26540..26775,29239..29369,29980..30112,30303..30425,31380..31454,31998..32113,32514..32580)] [gbkey=CDS]
Sequence

ATGGCATGTTCTTGCTGGAACTCCATTTTCACTCCTCTCAAACCTACTTATAACACCATT
TCTTCTGCTTCTGCTTCGCCTCATCAGCTTCCTCGGTTGGTACCAAGAGCATCAGCTAGT
ATTAACCGCAGGCAGTTAATCGCTGAGACTGCTGCTGCCATTGTACTACCGCCATTGCTC
GGAGCCGGAATCTCACCTCTCCCTGCTAAAGCTGACGAGGTGCCTCTCTCTGAATGGGAA
AGAGTTTATCTTCCTATTGACCCTGGTGTCGTCCTTCTCGACATTGCCTTCGTTCCCGAT
GACCCCACTCACGGTTTTCTACTGGGGACCAGGCAAACTATTTTGGAAACGAAGGATGGA
GGAACTACTTGGGCATCAAGATCTATAGCTTCTGCCGAAGAGGAAGATTTCAATTATAGG
TTTAATTCTATCAGCTTCAAAGGCAAGGAAGGGTGGATTATTGGAAAACCAGCAATCTTG
TTATATACTTCCGATGCTGGTGAAACCTGGCAGCGGATACCTTTGAGTTCTCAACTTCCT
GGTGACATGGTTTATATCAAGGCAACTGGAGAAAAAAGTGCAGAAATGGTAACTGATGAA
GGTGCAATATATGTTACATCGAACAAGGGATACAACTGGAAGGCTGCTATACAAGAAACT
GTGTCCGCTACCCTTAATAGAACAGTTTCTAGTGGCATTAGTGGTGCCAGTTACTATACA
GGCACTTTCAGTACTGTTAATCGCTCTCCTGATGGACGTTATGTAGCAGTTTCAAGCCGT
GGTAACTTCTATTTGACCTGGGAGCCAGGGCAGGCGTACTGGCAACCGCATAACAGAGCT
GTGGCTAGAAGAATCCAAAACATGGGCTGGAGGGCTGATGGTGGTCTTTGGCTACTCGTG
CGTGGTGGAGGGCTATACCTCAGCAAGGGCACAGGGTTATCGGAGGACTTTGAAGAAGTT
TCTGTACAAAGCCGTGGTTTTGGCATTCTTGATGTCGGCTACCGCTCACAGGATGAGGCA
TGGGCTGCTGGTGGAAGTGGGATTTTATTGAAGACCAAAAATGGCGGCAAGACATGGATT
CGTGACAAAGCAGCTGATAATATTGCTGCGAATCTTTATTCGGTGAAGTTTATCAATGAC
AACCAGGGATTTGTACTGGGGAATGATGGTGTTTTACTCAAGTATCTTGGATAA

Peptide Sequence

PEP ID

XP_016464814.1
PEP Infomation

PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic-like isoform X1 [Nicotiana tabacum]
Sequence

MACSCWNSIFTPLKPTYNTISSASASPHQLPRLVPRASASINRRQLIAETAAAIVLPPLL
GAGISPLPAKADEVPLSEWERVYLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTILETKDG
GTTWASRSIASAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTSDAGETWQRIPLSSQLP
GDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAIQETVSATLNRTVSSGISGASYYT
GTFSTVNRSPDGRYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLV
RGGGLYLSKGTGLSEDFEEVSVQSRGFGILDVGYRSQDEAWAAGGSGILLKTKNGGKTWI
RDKAADNIAANLYSVKFINDNQGFVLGNDGVLLKYLG

Transcript Sequence

Gene sequence data has not been registered.